Open source science
Open source science is science accomplished using an open source methodology.
Open source science includes:[1]
- Transparency in experimental methodology, observation, and collection of data (e.g. MOST methods)
- Public availability and reusability of that scientific data (e.g. the OSOTF)
- Public accessibility and transparency of scientific communication.
- Using web-based tools to facilitate scientific collaboration.
- Using and developing scientific or engineering open source software and open source hardware for use in doing science
See Building research equipment with free, open-source hardware[2] and Open-source Lab
To calculate the value of open source development for science see: Quantifying the Value of Open Source Hardware Development
Open source scientific software[edit | edit source]
Organized by discipline, gallery with screen shot and link. Use Open source engineering software to start but looking primarily for things like this
Open source scientific hardware[edit | edit source]
Open source scientific hardware is open source hardware used by scientists to do research or for education. This gallery and associated sub-pages are an extension of the book the Open Source Lab, which is about how to make scientific equipment following open source principles.
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NIH 3D Print Exchange - 3D-printable Custom Labware
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3D printable science equipment - 3D print your lab
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3D printable science equipment page 2 - more 3D prints for your lab
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3D printable science equipment page 3 - and even more
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Open Source Optics Library - and your optics lab
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Michigan Tech's Open Sustainability Technology Lab's efforts in open source hardware
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Open-source syringe pump - Parametric library of web-controlled open-source syringe pumps
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GaudiLabs- Swiss Fab Lab making low cost lab instruments
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OpenTrons - Open source fluid handling
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Plasmatron - OpenTrons derivative for semi-automated culture of malaria parasites
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IOrodeo - company making open source science instruments
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Cambridge JIC - 3D printable programmable digital microscope
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Open Source Imaging, NMR, MRI, EMF
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Open Behavior FOSH for animal behavior and cognition
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Openly Published Environmental Sensing Lab at OSU- rain catchment, wind vane, soil moisture, etc.
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Arduino - a class of open source microcontrollers useful for automating equipment
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Raspberry Pi - credit-card sized computer running Linux
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Red Pitaya - open source measurement and control tool
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OpenLabTools - University of Cambridge initiative in open source hardware for science
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Tekla Lab - Berkley's initiative for a library of open source DIY quality scientific lab equipment
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Sensorica - an Open Value Network providing sensing and automation solutions.
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Hackteria - webplatform and collection of Open Source Biological Art Projects
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Open Solar Outdoors Test Field - Solar photovoltaic testing
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Open Source Physiology Lab- 3D printing physiology equipment
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open ephys works on open-source electrophysiology
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Backyard Brains - neuroscience experiment kits for DIY electrophysiology
Open access scientific repositories[edit | edit source]
List - with link and brief description
- Public Library of Science(PLoS) - nonprofit scientific and medical publishing venture that provides scientists and physicians with high-quality, high-profile journals in which to publish their most important work.
- BioMed Central - BioMed Central is an STM (Science, Technology and Medicine) publisher which has pioneered the open access publishing model.
- OpenWetWare - OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering.
- SlideShare - A way to share presentations, documents, professional videos and open lecture materials.
- CC0- Creative Commons - CC0 enables scientists, educators, artists and other creators and owners of copyright or database-protected content, to waive those interests in their works and thereby place them as completely as possible in the public domain.
- Science 3.0 - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
- arXiv by Cornell University Library - Open access to over a million e-prints in Physics, Mathematics, Computer Science, Quantitative Biology, Quantitative Finance and Statistics
- HAL - HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research papers, whether they are published or not, and for PhD dissertation sponsored by the French government. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers.
- SSRN (Social Science Research Network) - SSRN is devoted to the rapid worldwide dissemination of social science research and is composed of a number of specialized research networks in each of the social sciences.
- Academia.edu - Academia.edu is a place to share and follow research
- Mendeley - Free reference manager and academic social network that can help you organize your research, collaborate with others online, and discover the latest research
- ResearchGate - For Scientists: Connect with researchers, make your work visible and stay current
- Alfresco - Browser-based platform for social content management and collaboration
Open scientific collaboration[edit | edit source]
Conferences[edit | edit source]
Websites[edit | edit source]
- The Open Source Science Project OSSP- platform where academic researchers from around the world collaborate to propose and conduct basic research projects with the support of funding provided by the broader online community
- Open Science Framework- open collaboration of scientists to increase the alignment between scientific values and scientific practices.
- Open Science Grid - The Open Science Grid (OSG) advances science through open distributed computing. The OSG is a multi-disciplinary partnership to federate local, regional, community and national cyberinfrastructures to meet the needs of research and academic communities at all scales.
- Open Source Ecology - is a network of farmers, engineers, and supporters building the Global Village Construction Set (GVCS). GVCS is a modular, DIY, low-cost, high-performance platform that allows for the easy fabrication of the 50 different Industrial Machines that it takes to build a small, sustainable civilization with modern comforts.
- Science 3.0 - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
- Personal Genome Project - the Human Genome Project provided the first drafts of nearly complete human genome sequences in 2001 after more than a decade of effort by scientists worldwide. This information is now being used to advance medicine, human biology, and knowledge of human origins.
Crowd sourced scientific funding[edit | edit source]
List - with link and brief description
- The Open Source Science Project OSSP - A research microfunding platform
- Petridish - Fund science & explore the world with renowned researchers
- Kopernik Technology Marketplace - Funding Campaigns for Sustainable Development
- Fund Science - Educating and enabling philanthropy through tactical funding of small pilot research projects up to $50,000
- Open Genius Project - Crowdfunding & Connecting people and researchers for the sake of alleviating academic poverty
- RocketHub SciFund - Brings Scientists together
- Innovation Endeavors - helps small teams tackling big problems
- I am Scientist - crowd sourced science funding
- We The Trees - crowd funding environmental change
- Start Some Good - crowd funding for social ventures
Open access scientific journals[edit | edit source]
- The Rise of Platinum Open Access Journals with both Impact Factors and Zero Article Processing Charges
- get relevant list and paste from Journals
- Energy Studies Review, (1991), McMaster University, applied energy policy journal, open access. SJR - 0.025
- Energy Sustainability and Society - new, Springer Open Journal, Interdisciplinary Forum for Research, Development & Implementation of Sustainable Energy Systems. Style - Harvard
- The Journal of Fundamentals of Renewable Energy and Applications, new, Ashdin Publishing. Numbered citation style, open access
- Innovative Energy Policies, (2010), Ashdin Publishing, open access, numbered citation style
- International Journal of Photoenergy, (1999), SJR - 0.04, impact factor: 1.345, open access, numbered citation style
- International Journal of Energy Science, (2011), World Academic Publishing, open access, free, numbered citations
- Journal of Energy Conservation - open access pub - (new 2012), numbered citations
- Smart Grid and Renewable Energy, (2011) Open Access, numbered style citations
- Public Library of Science (PLoS) Medicine, (2004), Open Access, Harvard style citations
Open source science literature[edit | edit source]
For comprehensive list see:
References[edit | edit source]
- ↑ The first four points were adapted from Dan Gezelter "What, exactly, is Open Science?", Posted on July 28, 2009 at http://www.openscience.org/blog/?p=269
- ↑ Pearce, Joshua M. 2012. "Building Research Equipment with Free, Open-Source Hardware." Science 337 (6100): 1303–1304. Podcast