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[[category:open source]]
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[[Category:Open source software]]
[[Category:Open source software]]


'''Open source science''' is science accomplished using an open source methodology.
[[image:OSL.jpg|right|thumb|[[Open-source Lab]]]]'''Open source science''' is science accomplished using an open source methodology.


Open source science includes <ref> The first four points were adapted from Dan Gezelter "What, exactly, is Open Science?", Posted on July 28, 2009 at
Open source science includes <ref> The first four points were adapted from Dan Gezelter "What, exactly, is Open Science?", Posted on July 28, 2009 at
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* Using web-based tools to facilitate scientific collaboration.
* Using web-based tools to facilitate scientific collaboration.
* Using and developing scientific or engineering [[open source software]] and [[open source hardware]] for use in doing science
* Using and developing scientific or engineering [[open source software]] and [[open source hardware]] for use in doing science
See [[Building research equipment with free, open-source hardware]]<ref> Pearce, Joshua M. 2012. “[http://www.sciencemag.org/content/337/6100/1303.summary Building Research Equipment with Free, Open-Source Hardware.]” ''Science'' '''337''' (6100): 1303–1304. [http://www.sciencemag.org/content/337/6100/1303/suppl/DC1 Podcast]</ref> and [[Open-source Lab]]
To calculate the value of open source development for science see: [[Quantifying the Value of Open Source Hardware Development]]


== Open source scientific software==
== Open source scientific software==
Organized by discipline ... gallery with screen shot and link
Organized by discipline, gallery with screen shot and link. Use [[Open source engineering software]] to start but looking primarily for things like [http://www.openscience.org/blog/?page_id=44 this]
Use [[Open source engineering software]] to start but looking primarily for things like: http://www.openscience.org/blog/?page_id=44
 
<gallery caption="Scientific Computing">
 
Image:SciPy 2.jpg|[http://www.scipy.org/ SciPy- Open source software for mathematics, science, and engineering]
Image:OpenMD.jpg|[http://openmd.net/ OpenMD- Open source molecular dynamics engine for simulating liquids, proteins, nanoparticles, interfaces, and other complex systems]
Image:Jmol.jpg|[http://jmol.sourceforge.net/ Jmol- An open source Java viewer for chemical structures in 3D]
Image:JChemPaint.jpg|[http://jchempaint.github.com/ JChemPaint - Chemical 2D structure editor application/applet based on the Chemistry Development Kit]
Image::RNMR.jpg|[http://rnmr.nmrfam.wisc.edu/ rNMR - Open source software for NMR data analysis]
</gallery>
 
 


== Open source scientific hardware==
== Open source scientific hardware==
Organized by discipline ...gallery with picture and link
{{Category:Open_source_scientific_hardware}}
 
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!<big>Open Science can save the planet</big>
|-
|<center>{{#widget:YouTube|id=uPtP6-nAjJ0}} </center>
|-
|}
{|style="border:1px solid #73BF73; background-color: #E6FFE6; margin-left:.1em; margin-top:2px; -moz-border-radius:15px;" align="right" width="150px"
!<big>Open-source Lab</big>
|-
|<center>{{#widget:YouTube|id=yiJDx9dCfEQ}} </center>
|-
|}
== Open access scientific repositories ==
== Open access scientific repositories ==
List - with link and brief description
List - with link and brief description
* arXiv
<br />
* HAL
 
* SSRN
* [http://www.plos.org/ Public Library of Science(PLoS)] - nonprofit scientific and medical publishing venture that provides scientists and physicians with high-quality, high-profile journals in which to publish their most important work.
* Academic.edu
* [http://www.biomedcentral.com/ BioMed Central] - BioMed Central is an STM (Science, Technology and Medicine) publisher which has pioneered the open access publishing model.
* http://www.mendeley.com/
* [http://openwetware.org/wiki/Main_Page OpenWetWare] - OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering.
* http://www.researchgate.net/
* [http://www.slideshare.net/ SlideShare] - A way to share presentations, documents, professional videos and open lecture materials.
* [http://creativecommons.org/science CC0- Creative Commons] - CC0 enables scientists, educators, artists and other creators and owners of copyright or database-protected content, to waive those interests in their works and thereby place them as completely as possible in the public domain.
* [http://www.science3point0.com/ Science 3.0] - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
* [http://arxiv.org/ arXiv by Cornell University Library] - Open access to over a million e-prints in Physics, Mathematics, Computer Science, Quantitative Biology, Quantitative Finance and Statistics
* [http://hal.archives-ouvertes.fr/index.php?langue=en&halsid=1vo52cjgapvm1m8djpa6pnjds0 HAL] -  HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research papers, whether they are published or not, and for PhD dissertation sponsored by the French government. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers.
* [http://www.ssrn.com/ SSRN (Social Science Research Network)] - SSRN is devoted to the rapid worldwide dissemination of social science research and is composed of a number of specialized research networks in each of the social sciences.
* [http://academia.edu/ Academia.edu] - Academia.edu is a place to share and follow research
* [http://www.mendeley.com/ Mendeley] - Free reference manager and academic social network that can help you organize your research, collaborate with others online, and discover the latest research
* [http://www.researchgate.net/ ResearchGate] - For Scientists: Connect with researchers, make your work visible and stay current
*[http://www.alfresco.com/products/collaboration/ Alfresco] - Browser-based platform for social content management and collaboration


== Open  scientific collaboration ==
== Open  scientific collaboration ==
List - with link and brief description
===Conferences===
* http://www.theopensourcescienceproject.com/
* [[Open Science Summit]]
 
===Websites===
 
* [http://www.theopensourcescienceproject.com/ The Open Source Science Project OSSP]- platform where academic researchers from around the world collaborate to propose and conduct basic research projects with the support of funding provided by the broader online community
 
* [http://openscienceframework.org/about/ Open Science Framework]- open collaboration of scientists to increase the alignment between scientific values and scientific practices.
 
* [https://www.opensciencegrid.org/bin/view Open Science Grid] - The Open Science Grid (OSG) advances science through open distributed computing. The OSG is a multi-disciplinary partnership to federate local, regional, community and national cyberinfrastructures to meet the needs of research and academic communities at all scales.
 
* [http://opensourceecology.org/ Open Source Ecology] - is a network of farmers, engineers, and supporters building the Global Village Construction Set (GVCS). GVCS is a modular, DIY, low-cost, high-performance platform that allows for the easy fabrication of the 50 different Industrial Machines that it takes to build a small, sustainable civilization with modern comforts.
 
* [http://www.science3point0.com/ Science 3.0] - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
 
* [http://www.personalgenomes.org/ Personal Genome Project] - the Human Genome Project provided the first drafts of nearly complete human genome sequences in 2001 after more than a decade of effort by scientists worldwide. This information is now being used to advance medicine, human biology, and knowledge of human origins.


== Crowd sourced scientific funding ==
== Crowd sourced scientific funding ==
List - with link and brief description
List - with link and brief description
* http://www.petridish.org/
* [http://www.theopensourcescienceproject.com/microfinance.php The Open Source Science Project OSSP] - A research microfunding platform
* [http://www.petridish.org/ Petridish] - Fund science & explore the world with renowned researchers
* [http://kopernik.info/en-us/list-funded-proposal Kopernik Technology Marketplace] - Funding Campaigns for Sustainable Development
* [http://fundscience.org/blog/?s=science Fund Science] - Educating and enabling philanthropy through tactical funding of small pilot research projects up to $50,000
* [http://www.opengenius.org/ Open Genius Project] - Crowdfunding & Connecting people and researchers for the sake of alleviating academic poverty
* [http://www.rockethub.com/projects/scifund RocketHub SciFund] - Brings Scientists together
* [http://innovationendeavors.com/ Innovation Endeavors ] - helps small teams tackling big problems
* [http://www.iamscientist.com/ I am Scientist] - crowd sourced science funding
* [http://www.wethetrees.com/ We The Trees] - crowd funding environmental change
* [http://startsomegood.com/ Start Some Good] - crowd funding for social ventures


== Open access scientific journals ==
== Open access scientific journals ==
* get relevant list and paste from [[Journals]]
* get relevant list and paste from [[Journals]]


== Open source science literature ==
*[http://digitalcommons.mcmaster.ca/esr/  Energy Studies Review], (1991), McMaster University, applied energy policy journal, open access. SJR - 0.025


'''Eric von Hippel and Georg von Krogh, (2003), “[http://www.jstor.org/stable/4135161 Open Source Software and the "Private-Collective: Issues for Organization Science]", ''Organization Science'', 14, no. 2, pages 209-223, doi:10.2307/4135161.'''
*[http://www.energsustainsoc.com/ Energy Sustainability and Society] - new, Springer Open Journal, Interdisciplinary Forum for Research, Development & Implementation of Sustainable Energy Systems. Style - Harvard
*Abstract


Currently, two models of innovation are prevalent in organization science. The "private investment" model assumes returns to the innovator result from private goods and efficient regimes of intellectual property protection. The "collective action" model assumes that under conditions of market failure, innovator collaborate in order to producea public good. The phenomenon of open source softwared evelopment shows that users program to solve their own as well as shared technical problems, and freely reveal their innovations without appropriating private returns from selling the software. In this paper we propose that open source software development is an exemplar of a compound "private-collective" model of innovation that contains elements of both the private investment and the collective action models and can offer society the "best of both worlds" under many conditions. We describe
*[http://www.ashdin.com/journals/JFREA/jfrea.aspx The Journal of Fundamentals of Renewable Energy and Applications], new, Ashdin Publishing. Numbered citation style, open access
a new set of research questions this model raises for scholars in organization science. We offer some details regarding the types of data available for open source projects in order to ease access for researchers who are unfamiliar with these, and also offer some advice on conducting empirical studies on opens ource softwar deevelopment processes.


'''Josh Lerner and Jean Tirole, (2002), "[http://onlinelibrary.wiley.com/doi/10.1111/1467-6451.00174/abstract Some Simple Economics of Open Source]", ''The Journal of Industrial Economics'', Volume 50, no. 2, pages 197-234, DOI: 10.1111/1467-6451.00174'''
*[http://www.ashdin.com/journals/iep/iep.aspx Innovative Energy Policies], (2010), Ashdin Publishing, open access, numbered citation style


*Abstract
*[http://www.hindawi.com/journals/ijp/ International Journal of Photoenergy], (1999), SJR - 0.04, impact factor: 1.345, open access, numbered citation style


There has been a recent surge of interest in open source software development, which involves developers at many different locations and organizations sharing code to develop and refine programs. To an economist, the behavior of individual programmers and commercial companies engaged in open source projects is initially startling. This paper makes a preliminary exploration of the economics of open source software. We highlight the extent to which labor economics, especially the literature on ‘career concerns’, and industrial organization theory can explain many of these projects’ features. We conclude by listing interesting research questions related to open source software.
*[http://www.ijesci.org/ International Journal of Energy Science], (2011), World Academic Publishing, open access, free, numbered citations


'''Steve Weber, (2004), The Success of Open Source (hardcover), Harvard University Press, 312 pages'''
*[http://openaccesspub.org/journals/index.php?jid=5 Journal of Energy Conservation] - open access pub - (new 2012), numbered citations


Table of Contents:  
*[http://www.scirp.org/journal/sgre/ Smart Grid and Renewable Energy], (2011) Open Access, numbered style citations


Preface
*[http://www.plosmedicine.org/home.action Public Library of Science (PLoS) Medicine], (2004), Open Access, Harvard style citations
<br />1. Property and the Problem of Software
<br />2. The Early History of Open Source
<br />3. What Is Open Source and How Does It Work?
<br />4. A Maturing Model of Production
<br />5. Explaining Open Source: Microfoundations
<br />6. Explaining Open Source: Macro-Organization
<br />7. Business Models and the Law
<br />8. The Code That Changed the World?
Notes
Index


== Open source science literature ==




See also:
 
For comprehensive list see:
* [[Open source science literature review]]
* [[Open source science literature review]]
* [[Open Source Appropriate Technology Literature Review]]
* [[Open Source Appropriate Technology Literature Review]]
Line 84: Line 130:
==References ==
==References ==
<references/>
<references/>
[[Category:Open source scientific hardware]]

Revision as of 07:19, 18 September 2017

Open-source Lab

Open source science is science accomplished using an open source methodology.

Open source science includes [1]:

  • Transparency in experimental methodology, observation, and collection of data (e.g. MOST methods)
  • Public availability and reusability of that scientific data (e.g. the OSOTF)
  • Public accessibility and transparency of scientific communication.
  • Using web-based tools to facilitate scientific collaboration.
  • Using and developing scientific or engineering open source software and open source hardware for use in doing science

See Building research equipment with free, open-source hardware[2] and Open-source Lab

To calculate the value of open source development for science see: Quantifying the Value of Open Source Hardware Development

Open source scientific software

Organized by discipline, gallery with screen shot and link. Use Open source engineering software to start but looking primarily for things like this


Open source scientific hardware

FA info icon.svg Angle down icon.svg Category data
Content 0 pages, 0 subcats, 0 files, 1 nested pages
Top page Open source science (2,518)


Open source scientific hardware is open source hardware used by scientists to do research or for education. This gallery and associated sub-pages are an extension of the book the Open Source Lab, which is about how to make scientific equipment following open source principles. Click on the hyperlinks under the images in this index to go to pages with hundreds of examples.

Open Science can save the planet
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Open-source Lab
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Open access scientific repositories

List - with link and brief description

  • Public Library of Science(PLoS) - nonprofit scientific and medical publishing venture that provides scientists and physicians with high-quality, high-profile journals in which to publish their most important work.
  • BioMed Central - BioMed Central is an STM (Science, Technology and Medicine) publisher which has pioneered the open access publishing model.
  • OpenWetWare - OpenWetWare is an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering.
  • SlideShare - A way to share presentations, documents, professional videos and open lecture materials.
  • CC0- Creative Commons - CC0 enables scientists, educators, artists and other creators and owners of copyright or database-protected content, to waive those interests in their works and thereby place them as completely as possible in the public domain.
  • Science 3.0 - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
  • arXiv by Cornell University Library - Open access to over a million e-prints in Physics, Mathematics, Computer Science, Quantitative Biology, Quantitative Finance and Statistics
  • HAL - HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research papers, whether they are published or not, and for PhD dissertation sponsored by the French government. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers.
  • SSRN (Social Science Research Network) - SSRN is devoted to the rapid worldwide dissemination of social science research and is composed of a number of specialized research networks in each of the social sciences.
  • Academia.edu - Academia.edu is a place to share and follow research
  • Mendeley - Free reference manager and academic social network that can help you organize your research, collaborate with others online, and discover the latest research
  • ResearchGate - For Scientists: Connect with researchers, make your work visible and stay current
  • Alfresco - Browser-based platform for social content management and collaboration

Open scientific collaboration

Conferences

Websites

  • The Open Source Science Project OSSP- platform where academic researchers from around the world collaborate to propose and conduct basic research projects with the support of funding provided by the broader online community
  • Open Science Framework- open collaboration of scientists to increase the alignment between scientific values and scientific practices.
  • Open Science Grid - The Open Science Grid (OSG) advances science through open distributed computing. The OSG is a multi-disciplinary partnership to federate local, regional, community and national cyberinfrastructures to meet the needs of research and academic communities at all scales.
  • Open Source Ecology - is a network of farmers, engineers, and supporters building the Global Village Construction Set (GVCS). GVCS is a modular, DIY, low-cost, high-performance platform that allows for the easy fabrication of the 50 different Industrial Machines that it takes to build a small, sustainable civilization with modern comforts.
  • Science 3.0 - Science 3.0 combines the hypothesis based inquiry of laboratory science with the methods of social science research. The website is a community where those interested in the advancement of research can share ideas, tools and build connections.
  • Personal Genome Project - the Human Genome Project provided the first drafts of nearly complete human genome sequences in 2001 after more than a decade of effort by scientists worldwide. This information is now being used to advance medicine, human biology, and knowledge of human origins.

Crowd sourced scientific funding

List - with link and brief description

Open access scientific journals

  • get relevant list and paste from Journals
  • Energy Studies Review, (1991), McMaster University, applied energy policy journal, open access. SJR - 0.025
  • Energy Sustainability and Society - new, Springer Open Journal, Interdisciplinary Forum for Research, Development & Implementation of Sustainable Energy Systems. Style - Harvard

Open source science literature

For comprehensive list see:

References

  1. The first four points were adapted from Dan Gezelter "What, exactly, is Open Science?", Posted on July 28, 2009 at http://www.openscience.org/blog/?p=269
  2. Pearce, Joshua M. 2012. “Building Research Equipment with Free, Open-Source Hardware.Science 337 (6100): 1303–1304. Podcast
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